Package: monographaR 1.3.1
monographaR: Taxonomic Monographs Tools
Contains functions intended to facilitate the production of plant taxonomic monographs. The package includes functions to convert tables into taxonomic descriptions, lists of collectors, examined specimens, identification keys (dichotomous and interactive), and can generate a monograph skeleton. Additionally, wrapper functions to batch the production of phenology histograms and distributional and diversity maps are also available.
Authors:
monographaR_1.3.1.tar.gz
monographaR_1.3.1.zip(r-4.5)monographaR_1.3.1.zip(r-4.4)monographaR_1.3.1.zip(r-4.3)
monographaR_1.3.1.tgz(r-4.4-any)monographaR_1.3.1.tgz(r-4.3-any)
monographaR_1.3.1.tar.gz(r-4.5-noble)monographaR_1.3.1.tar.gz(r-4.4-noble)
monographaR_1.3.1.tgz(r-4.4-emscripten)monographaR_1.3.1.tgz(r-4.3-emscripten)
monographaR.pdf |monographaR.html✨
monographaR/json (API)
# Install 'monographaR' in R: |
install.packages('monographaR', repos = c('https://mreginato.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mreginato/monographar/issues
- keyCode - KeyCode
- monographaR_examples - Input data examples
Last updated 10 months agofrom:908cc49559. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 04 2024 |
R-4.5-win | OK | Nov 04 2024 |
R-4.5-linux | OK | Nov 04 2024 |
R-4.4-win | OK | Nov 04 2024 |
R-4.4-mac | OK | Nov 04 2024 |
R-4.3-win | OK | Nov 04 2024 |
R-4.3-mac | OK | Nov 04 2024 |
Exports:buildMonographcodeGapcodeMatrixcollectorListdataKeydichoKeydichoKey.appexaminedSpecimensinteractiveKeyinteractiveKeyLabelsmapBatchmapDiversitymapPhenologymapTablephenoHisttableToDescription
Dependencies:askpassbase64encbootbslibcachemcircularclassclassIntclicommonmarkcrayoncurlDBIdigeste1071evaluatefastmapfontawesomefsgluehighrhtmltoolshttpuvhttrjquerylibjsonliteKernSmoothknitrlaterlatticelifecyclemagrittrMASSmemoisemimemvtnormopensslpngpromisesproxyR6rappdirsrasterRcpprlangrmarkdownrnaturalearthrparts2sasssfshinyshinydashboardshinythemesshinyWidgetssourcetoolsspsysterratinytexunitswithrwkxfunxtableyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Build and export a monograph skeleton (draft) | buildMonograph |
Code gap | codeGap |
Code character matrix | codeMatrix |
Generates a collector list | collectorList |
Prepares a data.frame suitable for buildKey | dataKey |
Dichotomous key | dichoKey |
Dichotomous key (shiny app) | dichoKey.app |
Generates an examined specimens list | examinedSpecimens |
Interactive key (shiny app) | interactiveKey |
Text labels for interactiveKey | interactiveKeyLabels |
keyCode | keyCode |
Generates map in batch mode | mapBatch |
Diversity heatmap | mapDiversity |
Phenology heatmap | mapPhenology |
Generates a presence/absence matrix of species on grids or countries | mapTable |
Tools for taxonomic monographs. | monographaR-package monographaR |
Input data examples | monographaR_examples |
Circular histograms of phenology | phenoHist |
Generates species descriptions | tableToDescription |